Researchers develop PARsing ModifiErS via Article aNnotations (PARMESAN), an open-source computational tool that automates the extraction of gene-gene and drug-gene relationships from research literature.
- It automatically extracts from PubMed and PubMed Central.
- It predicts unknown regulatory relationships.
- Each extracted and predicted relationship receives a numeric score based on evidence.
- The tool compares these scores to manually curated relationships in DGIdb and Reactome.
Tool is available at https://parmesan.nrihub.org/